The best way to do it is to convert them into .wav files so that you can imbed them versus linking them. that way the presentation can be one stand alone file instead several files.
By default, iTunes stores your music in your "My Documents" folder. In there you will find a "My Music" folder a subfolder of that is where you will find the actual music files. Most likely MP4 formatted.
Personally I use jHymn to convert .MP4's to other formats. Once you have the files in the proper format check out this tutorial. http://www.sameshow.com/ppt2flash/email-your-powerpoint-presentations-to-others-perfectly.html it will explain many of the problems that you will encounter with this task.
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